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adam_flume_cpu_mhd_kernels ​

ADAM, FLUME CPU kernels of the ideal MHD (no divergence control) model.

The model-agnostic auxiliary-variables loop (adam_flume_cpu_aux_kernels_agnostic.INC) and the MHD dt loop (adam_flume_cpu_mhd_kernels_agnostic.INC) instantiated with NV_K = NV_MHD, NV_AUX_K = NV_AUX_MHD (issue #41, section 4). The face-flux kernel is the shared body with the MHD split (M2-P3).

Source: src/app/flume/cpu/adam_flume_cpu_mhd_kernels.F90

Dependencies

Contents ​

Subroutines ​

compute_face_fluxes ​

Compute the WENO face fluxes of direction d: face (i,j,k) lies between cells (i,j,k) and (i+di,j+dj,k+dk), so the face array starts at index 0 along d.

Per face: gather the stencil m = 1-S ... S into constant-bound locals, project and split it, reconstruct every field (the local v is the packed stencil of the WENO primitive), back-project.

fortran
subroutine compute_face_fluxes(d, di, dj, dk, ni, nj, nk, ngc, blocks_number, gamma, ch, is_characteristic, weno, q, q_aux, fl)

Arguments

NameTypeIntentAttributesDescription
dinteger(kind=I4P)inDirection, 1=x, 2=y, 3=z.
diinteger(kind=I4P)inUnit step along d.
djinteger(kind=I4P)inUnit step along d.
dkinteger(kind=I4P)inUnit step along d.
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
gammareal(kind=R8P)inSpecific heats ratio.
chreal(kind=R8P)inGLM cleaning speed (models with GLM only).
is_characteristiclogicalinCharacteristic (or conservative) variables.
wenotype(weno_object)inWENO coefficients.
qreal(kind=R8P)inConservative variables.
q_auxreal(kind=R8P)inAuxiliary variables.
flreal(kind=R8P)inoutFace fluxes of direction d.

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add_gravity_edge_correction ​

Add the faces beyond the block to the gravity energy correction of direction d (issue #73, M7-G2a): cell 1 takes -g_d F^rho / 24 of face -1 (between cells -1 and 0), cell n_d that of face n_d + 1 (between cells n_d + 1 and n_d + 2), the two terms of g_d (-F_{i-3/2} + F_{i-1/2} + F_{i+1/2} - F_{i+3/2}) / 24 whose faces the block does not hold. Each face is computed as compute_face_fluxes does (the same body, its mass component kept), from the ghosts: its stencil reaches S + 1 ghost cells, which the initialisation requires with gravity.

fortran
subroutine add_gravity_edge_correction(d, di, dj, dk, ni, nj, nk, ngc, blocks_number, gamma, ch, is_characteristic, weno, ir, gd, q, q_aux, gc)

Arguments

NameTypeIntentAttributesDescription
dinteger(kind=I4P)inDirection, 1=x, 2=y, 3=z.
diinteger(kind=I4P)inUnit step along d.
djinteger(kind=I4P)inUnit step along d.
dkinteger(kind=I4P)inUnit step along d.
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
gammareal(kind=R8P)inSpecific heats ratio.
chreal(kind=R8P)inGLM cleaning speed (models with GLM only).
is_characteristiclogicalinCharacteristic (or conservative) variables.
wenotype(weno_object)inWENO coefficients.
irinteger(kind=I4P)inIndex of the density (mass) variable.
gdreal(kind=R8P)inGravity along d.
qreal(kind=R8P)inConservative variables.
q_auxreal(kind=R8P)inAuxiliary variables.
gcreal(kind=R8P)inoutGravity energy correction [1, ...].

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compute_q_aux ​

Compute the auxiliary variables on every cell, ghost cells included.

fortran
subroutine compute_q_aux(ni, nj, nk, ngc, blocks_number, gamma, R, q, q_aux)

Arguments

NameTypeIntentAttributesDescription
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
gammareal(kind=R8P)inSpecific heats ratio.
Rreal(kind=R8P)inGas constant.
qreal(kind=R8P)inConservative variables.
q_auxreal(kind=R8P)inoutAuxiliary variables.

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count_nonfinite ​

Count the non-finite (NaN or infinite) conservative values of the interior cells (issue #45): the exponent field has all its bits set. Tested on the bit pattern, so that no floating point mode can fold the test away.

fortran
subroutine count_nonfinite(ni, nj, nk, ngc, blocks_number, q, n)

Arguments

NameTypeIntentAttributesDescription
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
qreal(kind=R8P)inConservative variables.
ninteger(kind=I8P)outNon-finite values number.

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compute_lambda_max ​

Compute max(sum_d (|u_d| + c_{f,d}) / dx_d) over the interior cells (null directions excluded), c_{f,d} the fast magnetosonic speed along d (issue #41, section 3.5).

fortran
subroutine compute_lambda_max(ni, nj, nk, ngc, blocks_number, gamma, R, dxyz, is_null, q, lambda_max)

Arguments

NameTypeIntentAttributesDescription
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
gammareal(kind=R8P)inSpecific heats ratio.
Rreal(kind=R8P)inGas constant.
dxyzreal(kind=R8P)inBlocks space steps [3, nb].
is_nulllogicalinNull directions.
qreal(kind=R8P)inConservative variables.
lambda_maxreal(kind=R8P)outMaximum of sum_d (|u_d| + c_{f,d}) / dx_d.

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compute_lambda_max_dissipative ​

Compute max(sum_d (|u_d| + c_{f,d}) / dx_d + 2 nu sum_d 1 / dx_d^2) over the interior cells (issue #65, D-M4-3), nu the largest diffusivity of the cell (Ohmic included), with the maxima of the two parts and the minimum cell Reynolds number; the MHD twin of the Euler compute_lambda_max_dissipative.

fortran
subroutine compute_lambda_max_dissipative(ni, nj, nk, ngc, blocks_number, gamma, R, cp, mu0, k0, eta, t_wall, tref, omega_mu, omega_k, dxyz, is_null, q, lambda_max, lambda_hyp, lambda_dif, re_cell_min)

Arguments

NameTypeIntentAttributesDescription
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
gammareal(kind=R8P)inSpecific heats ratio, gas constant, cp.
Rreal(kind=R8P)inSpecific heats ratio, gas constant, cp.
cpreal(kind=R8P)inSpecific heats ratio, gas constant, cp.
mu0real(kind=R8P)inDissipative coefficients.
k0real(kind=R8P)inDissipative coefficients.
etareal(kind=R8P)inDissipative coefficients.
t_wallreal(kind=R8P)inHottest isothermal wall temperature, 0 if none.
trefreal(kind=R8P)inTemperature laws.
omega_mureal(kind=R8P)inTemperature laws.
omega_kreal(kind=R8P)inTemperature laws.
dxyzreal(kind=R8P)inBlocks space steps [3, nb].
is_nulllogicalinNull directions.
qreal(kind=R8P)inConservative variables.
lambda_maxreal(kind=R8P)outMaximum of the sum.
lambda_hypreal(kind=R8P)outMaximum of the hyperbolic part.
lambda_difreal(kind=R8P)outMaximum of the diffusive part.
re_cell_minreal(kind=R8P)outMinimum cell Reynolds number.

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apply_floors ​

Apply the MHD positivity floors to the interior cells of a stage state, before its ghost exchange (issue #41, section 3.8): a cell with rho < rho_floor or p < p_floor gets rho = max(rho, rho_floor) at fixed velocity and p = max(p, p_floor) (internal energy added; the model's cleaning_energy adapter adds psi^2 / 2 under EGLM, zero otherwise). Interior only: the exchange then carries the floored values to the ghost cells, and ghost cells that no map fills (never read by the stencils) are not inspected. Returns the floored cells, the cells with a non-positive density or pressure (counted before flooring) and the minimum density and pressure. Floors are not conservative: the caller logs the counters.

fortran
subroutine apply_floors(ni, nj, nk, ngc, blocks_number, gamma, R, rho_floor, p_floor, q, floored, nonpositive, rho_min, p_min)

Arguments

NameTypeIntentAttributesDescription
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
gammareal(kind=R8P)inSpecific heats ratio.
Rreal(kind=R8P)inGas constant.
rho_floorreal(kind=R8P)inDensity and pressure floors.
p_floorreal(kind=R8P)inDensity and pressure floors.
qreal(kind=R8P)inoutConservative variables.
flooredinteger(kind=I4P)outFloored cells.
nonpositiveinteger(kind=I4P)outCells with non-positive density or pressure.
rho_minreal(kind=R8P)outMinimum density and pressure.
p_minreal(kind=R8P)outMinimum density and pressure.

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compute_speed_max ​

Compute max(|u_d| + c_{f,d}) over the interior cells and the active directions, the fastest wave speed (the GLM c_h check, issue #41, section 3.5).

fortran
subroutine compute_speed_max(ni, nj, nk, ngc, blocks_number, gamma, R, is_null, q, speed_max)

Arguments

NameTypeIntentAttributesDescription
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
gammareal(kind=R8P)inSpecific heats ratio.
Rreal(kind=R8P)inGas constant.
is_nulllogicalinNull directions.
qreal(kind=R8P)inConservative variables.
speed_maxreal(kind=R8P)outMaximum of |u_d| + c_{f,d}.

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compute_divb_norms ​

Compute the div(B) norms over the interior cells (issue #41, D-10): max|div B|, sum |div B| dV and the maximum over the seam-local cells (within band cells of a block face with seam(b,face) /= 0, a 2:1 AMR or inter-realm seam). div B is the centred finite difference of the library (half stencil hs), null directions weighted zero; the cell volume includes the null directions (issue #37). The caller has refreshed the ghost cells.

fortran
subroutine compute_divb_norms(ni, nj, nk, ngc, blocks_number, hs, band, dxyz, is_null, seam, q, divb_max, divb_l1, divb_seam_max)

Arguments

NameTypeIntentAttributesDescription
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
hsinteger(kind=I4P)inFinite difference half stencil, <= ngc.
bandinteger(kind=I4P)inSeam-local band width, in cells.
dxyzreal(kind=R8P)inBlocks space steps [3, nb].
is_nulllogicalinNull directions.
seaminteger(kind=I4P)inSeam faces flags [nb, 6] (0: not a seam face).
qreal(kind=R8P)inConservative variables.
divb_maxreal(kind=R8P)outMaximum of |div B|.
divb_l1real(kind=R8P)outSum of |div B| dV.
divb_seam_maxreal(kind=R8P)outMaximum of |div B| over the seam-local cells.

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compute_positivity_factors ​

Compute the cell factor Lambda of every interior cell into lam(1,:,:,:,:) (the other components untouched) and count the cells whose backbone is not admissible (Lambda = 0 there: the floors, if enabled, take over) and those with a non-finite high-order face flux (Lambda = 0 too: a NaN or infinite flux carries no information, and every comparison with it is false, so the corner factors would keep it; tested on the bit pattern as count_nonfinite).

fortran
subroutine compute_positivity_factors(ni, nj, nk, ngc, blocks_number, gamma, ch, damping, hs, dt, g, has_phi, phi, dxyz, is_null, q, q_aux, flx, fly, flz, gc, lam, bad, nonfinite)

Arguments

NameTypeIntentAttributesDescription
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
gammareal(kind=R8P)inSpecific heats ratio.
chreal(kind=R8P)inGLM cleaning speed (EGLM only).
dampingreal(kind=R8P)inGLM damping rate (EGLM only).
hsinteger(kind=I4P)inHalf stencil of the high-order sources.
dtreal(kind=R8P)inForward-Euler step of the stage.
greal(kind=R8P)inGravity (issue #73), zero without it.
has_philogicalinThe cell potential is applied (issue #81).
phireal(kind=R8P)inGravitational potential (read with has_phi).
dxyzreal(kind=R8P)inBlocks space steps [3, nb].
is_nulllogicalinNull directions.
qreal(kind=R8P)inConservative variables (ghosts updated).
q_auxreal(kind=R8P)inAuxiliary variables.
flxreal(kind=R8P)inX-face high-order fluxes.
flyreal(kind=R8P)inY-face high-order fluxes.
flzreal(kind=R8P)inZ-face high-order fluxes.
gcreal(kind=R8P)inGravity energy correction (zero without it).
lamreal(kind=R8P)inoutCell factors (component 1).
badinteger(kind=I4P)outCells with an inadmissible backbone.
nonfiniteinteger(kind=I4P)outCells with a non-finite high-order face flux.

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compute_seam_positivity_factors ​

Recompute the factor of the cells beside a 2:1 seam with the seam faces' backbone and high-order fluxes overridden (issue #50, D1: per-stage seam flux synchronisation). Cell n is cell(1:4,n) = (i, j, k, b); its face fec (1..6: -x, +x, -y, +y, -z, +z) takes olo(:,fec,n) and ohi(:,fec,n) where omask(fec,n), the backbone flux of q and the high-order flux of flx/fly/flz elsewhere, exactly as compute_positivity_factors. dbad and dnonfinite return the change of the two counts against the factors without the overrides, which compute_positivity_factors has already counted.

fortran
subroutine compute_seam_positivity_factors(ngc, gamma, ch, damping, hs, dt, g, has_phi, phi, dxyz, is_null, q, q_aux, flx, fly, flz, gc, ncells, cell, omask, olo, ohi, lam, dbad, dnonfinite)

Arguments

NameTypeIntentAttributesDescription
ngcinteger(kind=I4P)inGhost cells number.
gammareal(kind=R8P)inSpecific heats ratio.
chreal(kind=R8P)inGLM cleaning speed (EGLM only).
dampingreal(kind=R8P)inGLM damping rate (EGLM only).
hsinteger(kind=I4P)inHalf stencil of the high-order sources.
dtreal(kind=R8P)inForward-Euler step of the stage.
greal(kind=R8P)inGravity (issue #73), zero without it.
has_philogicalinThe cell potential is applied (issue #81).
phireal(kind=R8P)inGravitational potential (read with has_phi).
dxyzreal(kind=R8P)inBlocks space steps [3, nb].
is_nulllogicalinNull directions.
qreal(kind=R8P)inConservative variables (ghosts updated).
q_auxreal(kind=R8P)inAuxiliary variables.
flxreal(kind=R8P)inX-face high-order fluxes.
flyreal(kind=R8P)inY-face high-order fluxes.
flzreal(kind=R8P)inZ-face high-order fluxes.
gcreal(kind=R8P)inGravity energy correction (zero without it).
ncellsinteger(kind=I4P)inSeam cells.
cellinteger(kind=I4P)inSeam cells (i, j, k, b) [4, ncells].
omasklogicalinOverridden faces [6, ncells].
oloreal(kind=R8P)inOverride backbone fluxes [nv, 6, ncells].
ohireal(kind=R8P)inOverride high-order fluxes [nv, 6, ncells].
lamreal(kind=R8P)inoutCell factors (component 1).
dbadinteger(kind=I4P)outChange of the inadmissible backbones count.
dnonfiniteinteger(kind=I4P)outChange of the non-finite cells count.

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compute_backbone_fluxes ​

Compute the backbone flux of n face state pairs of direction d (issue #50: the fine faces of a 2:1 seam take the coarse donor cell as their outer state).

fortran
subroutine compute_backbone_fluxes(n, d, gamma, ch, qL, qR, flo)

Arguments

NameTypeIntentAttributesDescription
ninteger(kind=I4P)inFaces number.
dinteger(kind=I4P)inDirection, 1=x, 2=y, 3=z.
gammareal(kind=R8P)inSpecific heats ratio.
chreal(kind=R8P)inGLM cleaning speed (EGLM only).
qLreal(kind=R8P)inLeft states [nv, n].
qRreal(kind=R8P)inRight states [nv, n].
floreal(kind=R8P)outBackbone fluxes [nv, n].

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positivity_cell_factor ​

The factor of one cell from its backbone update qb, the antidiffusive differences dlt(:,1:nf) of its active faces and the source difference dsrc: status 1 (and lc = 0) if the backbone is not admissible, 2 (and lc = 0) if a face difference is not finite (a NaN passes every comparison of the corners), else 0 with lc the largest factor of the corner box.

Attributes: pure

fortran
subroutine positivity_cell_factor(nf, qb, dlt, dsrc, lc, status)

Arguments

NameTypeIntentAttributesDescription
nfinteger(kind=I4P)inActive faces.
qbreal(kind=R8P)inBackbone update.
dltreal(kind=R8P)inAntidiffusive differences.
dsrcreal(kind=R8P)inSource difference.
lcreal(kind=R8P)outCell factor.
statusinteger(kind=I4P)out0 admissible, 1 inadmissible backbone, 2 non-finite.

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blend_positivity_fluxes ​

Blend the face fluxes of direction d with the backbone: F <- F^LLF + theta (F - F^LLF), theta the smaller factor of the two cells (ghost factors from the exchange; a ghost never written keeps 1, so a physical-boundary face takes the interior cell's factor). Faces with theta = 1 are left untouched (bitwise), and counted otherwise; a face with theta = 0 takes the backbone flux itself (0 * NaN would keep a non-finite high-order flux).

fortran
subroutine blend_positivity_fluxes(d, di, dj, dk, ni, nj, nk, ngc, blocks_number, gamma, ch, q, lam, fl, limited)

Arguments

NameTypeIntentAttributesDescription
dinteger(kind=I4P)inDirection, 1=x, 2=y, 3=z.
diinteger(kind=I4P)inUnit step along d.
djinteger(kind=I4P)inUnit step along d.
dkinteger(kind=I4P)inUnit step along d.
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
gammareal(kind=R8P)inSpecific heats ratio.
chreal(kind=R8P)inGLM cleaning speed (EGLM only).
qreal(kind=R8P)inConservative variables.
lamreal(kind=R8P)inCell factors (component 1).
flreal(kind=R8P)inoutFace fluxes of direction d.
limitedinteger(kind=I4P)outFaces with theta < 1.

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blend_inadmissible_ghosts ​

Blend every inadmissible face ghost of q toward the adjacent interior cell and count the ghosts blended.

fortran
subroutine blend_inadmissible_ghosts(ni, nj, nk, ngc, blocks_number, is_null, q, blended)

Arguments

NameTypeIntentAttributesDescription
niinteger(kind=I4P)inGrid dimensions.
njinteger(kind=I4P)inGrid dimensions.
nkinteger(kind=I4P)inGrid dimensions.
ngcinteger(kind=I4P)inGrid dimensions.
blocks_numberinteger(kind=I4P)inActual blocks number.
is_nulllogicalinNull directions.
qreal(kind=R8P)inoutConservative variables (ghosts updated).
blendedinteger(kind=I4P)outGhosts blended.

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face_split_fluxes ​

Split adapter of the shared face kernel (issue #41, M2-P3): the MHD split without cleaning, ch unused.

Attributes: pure

fortran
subroutine face_split_fluxes(gamma, ch, d, S, is_characteristic, qs, qas, fsplit, er, mu)

Arguments

NameTypeIntentAttributesDescription
gammareal(kind=R8P)inSpecific heats ratio.
chreal(kind=R8P)inGLM cleaning speed.
dinteger(kind=I4P)inDirection, 1=x, 2=y, 3=z.
Sinteger(kind=I4P)inWENO stencil half-width, S <= S_MAX.
is_characteristiclogicalinCharacteristic (or conservative) variables.
qsreal(kind=R8P)inStencil conservative variables.
qasreal(kind=R8P)inStencil auxiliary variables.
fsplitreal(kind=R8P)outSplit fields in the WENO upwind layout.
erreal(kind=R8P)outRight eigenvectors.
mureal(kind=R8P)outMagnitude of each field (WENO descaler).

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backbone_face_flux ​

Backbone adapter of the positivity limiter: the Lax-Friedrichs flux with the Wu speed, ch unused.

Attributes: pure

fortran
subroutine backbone_face_flux(gamma, ch, d, qL, qR, f)

Arguments

NameTypeIntentAttributesDescription
gammareal(kind=R8P)inSpecific heats ratio.
chreal(kind=R8P)inGLM cleaning speed.
dinteger(kind=I4P)inDirection, 1=x, 2=y, 3=z.
qLreal(kind=R8P)inLeft state.
qRreal(kind=R8P)inRight state.
freal(kind=R8P)outFlux.

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cell_sources ​

Sources adapter of the positivity limiter: none (MHD without divergence control).

Attributes: pure

fortran
subroutine cell_sources(ngc, hs, damping, dxyz, is_null, q, q_aux, i, j, k, b, s_lo, s_hi)

Arguments

NameTypeIntentAttributesDescription
ngcinteger(kind=I4P)inGhost cells number.
hsinteger(kind=I4P)inHalf stencil of the high-order sources.
dampingreal(kind=R8P)inGLM damping rate.
dxyzreal(kind=R8P)inBlock space steps.
is_nulllogicalinNull directions.
qreal(kind=R8P)inConservative variables.
q_auxreal(kind=R8P)inAuxiliary variables.
iinteger(kind=I4P)inCell indexes.
jinteger(kind=I4P)inCell indexes.
kinteger(kind=I4P)inCell indexes.
binteger(kind=I4P)inCell indexes.
s_loreal(kind=R8P)outBackbone sources.
s_hireal(kind=R8P)outHigh-order sources.

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Functions ​

cleaning_energy ​

Cleaning-energy adapter of the floors kernel: zero, psi (if any) is not part of the energy of this model.

Attributes: pure

Returns: real(kind=R8P)

fortran
function cleaning_energy(q) result(e)

Arguments

NameTypeIntentAttributesDescription
qreal(kind=R8P)inConservative variables.

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internal_energy ​

Internal-energy adapter of the positivity limiter: E minus the kinetic and magnetic energies, per unit volume.

Attributes: pure

Returns: real(kind=R8P)

fortran
function internal_energy(q) result(e)

Arguments

NameTypeIntentAttributesDescription
qreal(kind=R8P)inConservative variables.

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